How to print resampling values and bremer values on a consensus tree

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Suppose you already have your strict consensus and you are interested in plotting the values of jackniffing for the nodes in that tree.

1-. Be sure that the consensus tree is in the memory.

2-. Turn on the tree tags storing. In the menu version go to Tree/Multiple tags/store tree tags. The command to do that is ttags =

3-. Perform the Resampling analysis.

4-. To print the tags on the tree go to Tree/Multiple tags/show-save tree tags. The tree with the labels can be saved as a graphic pressing the letter M. The command to do that is ttags ;


Plotting bremer support values and resampling values on the same tree is very similar. The only thing you should take care of is that when doing your bremer analysis you will have lots of suboptimal trees held in memory but not the consensus where you want to plot your values. Hence you have to clear the tree buffer after running your bremer (keep 0) and then open the file where you have already stored your consensus. After that you can go to Tree/Multiple tags/show-save tree tags to see both legends: bremer support and resampling.

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