Commands/prunnelsen

From TNT

prunnelsen
Version: 1.1.
Menu path: to do.

PRUNNELSEN
   =P N/L Show pruned trees with up to P taxa pruned (default=1) 
          for consensus of tree(s) N, excluding taxon (taxa) L. 
          Checks whether additinal groups appear. 
   [J]    same, but only for node J of consensus 
   &      show list of prunings that improve consensus 
   *      store prunings that improve consensus (pruned 
          taxa are placed at the base of the tree) 
   >N     show only prunings that improve more than N nodes 
   +      calculate agreement subtree (cannot be used with 
          =, [N], or >, but can be used together with * or &). 
          Agreement subtrees maximize number of shared taxa, 
          not number of shared groups (although both are the 
          same for binary input trees) 
   !      approximate calculation of agreement subtree (for 
          binary input trees only). If used alone quickest, 
          if used with + intermediate. Saves or lists a single 
          tree.

---

Example: show prunned trees with 4 pruned taxa for consensus of trees 1, 2, 5 and 6.

 TNT will also list the prunings that improve consensus.